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Dr Simon Tuke
The University of Adelaide
Jonathan Tuke qualified in 1992 from the University of Adelaide as a veterinary surgeon. After 9 years in general practice, he returned to university to study mathematics and computer science at the University of Adelaide. He completed a degree, then honours and finally a PhD in statistics in 2013. Since 2007 he has been a lecturer in statistics at the University of Adelaide. Along with this eclectic mix of applied statistical collaborations, his primary research interest is in developing statistical methods to model random networks.
Research Interests:
Bioinformatics
Biostatistics
Random networks
Qualifications:
BVM&S
BSc (Maths and Computer Science)
Ph.D.
Projects
Publications
Invited talks, refereed proceedings and other conference outputs
Roughan, M., Tuke J., & Parsonage E.
(2019). Estimating the parameters of the Waxman random graph.
16th Workshop on Algorithms and Models for the Web Graph (WAW 2019). 11631, 71-86. doi: 10.1007/978-3-030-25070-6_6
Glonek, M., Tuke J., Mitchell L., & Bean N. G.
(2019). GLaSS: Semi-supervised Graph Labelling with Markov Random Walks to Absorption.
(Aiello, L. Maria, Cherifi C., Cherifi H., Lambiotte R., Lió P., & Rocha L. M., Ed.).Complex Networks and Their Applications. 812, 304-315. doi: 10.1007/978-3-030-05411-3_25
Michaelson, G., Roughan M., Tuke J., Wand M., & Bush R.
(2018). Rasch analysis of HTTP reachability.
Proceedings of International Federation for Information Processing Networking 2018. 1, 1-9. doi: 10.23919/IFIPNetworking.2018.8696525
Korver, S. K., Bowen J. M., Ball I. A., Gibson R. J., Tuke J., Logan R., et al.
(2018). Personalised supportive care for patients receiving 5-fluorouracil (5-FU): analysis of multivariate SNP risk prediction for GI toxicity.
ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY. 14, 58–59. doi: 10.1111/ajco.13088
Tuke, J., & Roughan M.
(2015). The Hitchhikers Guide to sharing graph data.
IEEE International Conference on Open and Big Data. doi: 10.1109/FiCloud.2015.76
Journal Articles
Edwards, M., Mitchell L., Tuke J., & Roughan M.
(2018). The one comparing narrative social network extraction techniques.
arXiv preprint arXiv:1811.01467.
Tuke, J., Nguyen A., Nasim M., Mellor D., Wickramasinghe A., Bean N. G., et al.
(2018). Pachinko Prediction: A Bayesian method for event prediction from social media data.
arXiv preprint arXiv:1809.08427.
Dom, Z. I. Md, Coller J. K., Carroll R. P., Tuke J., McWhinney B. C., Somogyi A. A., et al.
(2018). Mycophenolic acid concentrations in peripheral blood mononuclear cells are associated with the incidence of rejection in renal transplant recipients.
British Journal of Clinical Pharmacology. 84(10), 2433–2442. doi: 10.1111/bcp.13704
Rohrlach, AB., Bean N. G., Glonek G., Holland B., Tobler R., Tuke J., et al.
(2018). Dimension Reduction and Visualization for Single-copy Alignments via Generalized PCA.
bioRxiv. 338442. doi: 10.1101/338442
Price, D. J., Bean N. G., Ross J.V., & Tuke J.
(2018). An induced natural selection heuristic for finding optimal Bayesian experimental designs.
Computational Statistics & Data Analysis. 126, 112–124. doi: 10.1016/j.csda.2018.04.011
Chen, K., Glonek G., Hansen A., Williams S., Tuke J., Salter A., et al.
(2017). Reply to `Comments on the effects of air pollution on asthma hospital admissions in Adelaide, South Australia, 2003-2013: time series and case-crossover analyses'..
Clinical and experimental allergy: journal of the British Society for Allergy and Clinical Immunology. 47, 141. doi: 10.1111/cea.12841
Michaelson, G., Roughan M., Tuke J., Wand M., & Bush R.
(2017). Rigorous statistical analysis of HTTPS reachability.
arXiv preprint arXiv:1706.02813.
Weaver, T., Valcanis M., Mercoulia K., Sait M., Tuke J., Kiermeier A., et al.
(2017). Longitudinal study of Salmonella 1, 4,[5], 12: i:-shedding in five Australian pig herds.
Preventive Veterinary Medicine. 136, 19–28. doi: 10.1016/j.prevetmed.2016.11.010
Lehmann, H. S., Musk G. C., Laurence M., Hyndman T. H., Tuke J., Collins T., et al.
(2017). Mitigation of electroencephalographic and cardiovascular responses to castration in Bos indicus bulls following the administration of either lidocaine or meloxicam.
Veterinary Anaesthesia and Analgesia. doi: 10.1016/j.vaa.2017.04.009
Marum, J. E., Yeung D. T., Purins L., Reynolds J., Parker W. T., Stangl D., et al.
(2017). ASXL1 and BIM germ line variants predict response and identify CML patients with the greatest risk of imatinib failure.
Blood Advances. 1, 1369–1381. doi: 10.1182/bloodadvances.2017006825
Tobler, R., Rohrlach AB., Soubrier J., Bover P., Llamas B., Tuke J., et al.
(2017). Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia.
Nature. 544, 180–184. doi: 10.1038/nature21416
Crotty, S. M., Minh B. Quang, Bean N. G., Holland B. R., Tuke J., Jermiin L. S., et al.
(2017). GHOST: Recovering Historical Signal from Heterotachously-evolved Sequence Alignments.
bioRxiv. 174789. doi: 10.1101/174789
Lehmann, H., Musk G., Lawrence M., Bech-Gleerup K., Collins T., Hyndman T., et al.
(2017). Lidocaine or meloxicam analgesia decrease nociception as indicated by cardiovascular responses of halothane-anaesthetized Bos indicus bull calves during surgical castration.
Veterinary Anaesthesia and Analgesia. 44, 195–e7. doi: 10.1016/j.vaa.2016.12.043
Price, D. J., Bean N. G., Ross J.V., & Tuke J.
(2017). An Induced Natural Selection Heuristic for Evaluating Optimal Bayesian Experimental Designs.
arXiv preprint arXiv:1703.05511.
Musk, G. C., Jacobsen S., Hyndman T. H., Lehmann H. S., Tuke J., Collins T., et al.
(2017). Objective measures for the assessment of post-operative pain in Bos indicus bull calves following castration.
Animals. 7, 76. doi: 10.3390/ani7100076
Musk, GC., Costa RS., & Tuke J.
(2016). Body temperature measurements in pigs during general anaesthesia.
Laboratory animals. 50, 119–124.
S. Ghaemi, R., Delalat B., Cetó X., Harding F. J., Tuke J., & Voelcker N. H.
(2016). Synergistic influence of collagen I and BMP 2 drives osteogenic differentiation of mesenchymal stem cells: A cell microarray analysis.
Acta Biomaterialia. 34, 41-52. doi: 10.1016/j.actbio.2015.07.027
Delacroix, S., Chokka R., Nelson A., Sidharta S., Teo K., Tuke J., et al.
(2016). Safety and efficacy of pro ANP 31-67 in cardiorenal syndrome: A first-in-human trial.
Journal of the American College of Cardiology. 67(13), doi: 10.1016/S0735-1097(16)31352-3
Chen, K., Glonek G., Hansen A., Williams S., Tuke J., Salter A., et al.
(2016). The effects of air pollution on asthma hospital admissions in Adelaide, South Australia, 2003-2013: Time-series and case-crossover analyses.
Clinical & Experimental Allergy. 46(11), 1416-1430. doi: 10.1111/cea.12795
Price, D. J., Bean N. G., Ross J.V., & Tuke J.
(2016). On the efficient determination of optimal Bayesian experimental designs using ABC: A case study in optimal observation of epidemics.
Journal of Statistical Planning and Inference. 172, 1-15. doi: 10.1016/j.jspi.2015.12.008
Lehmann, H. S., Musk G., Laurence M., Collins T., Gleerup KB., Hyndman T., et al.
(2016). Electroencephalographic responses of halothane anaesthetised Bos indicus bull calves during surgical castration treated with lidocaine or meloxicam for analgesia.
Veterinary Anaesthesia and Analgesia. 43, A1–A27.
Musk, G. C., Laurence M., Collins T., Tuke J., & Hyndman T. H.
(2016). Mechanical nociceptive threshold testing in Bos indicus bull calves.
Animal Production Science. 57(3), 576–582. doi: 10.1071/AN15441
Ghaemi, S. Rasi, Delalat B., Cetó X., Harding F. J., Tuke J., & Voelcker N. H.
(2016). Synergistic influence of collagen I and BMP 2 drives osteogenic differentiation of mesenchymal stem cells: A cell microarray analysis.
Acta biomaterialia. 34, 41–52.
